Index

A

AcousticData (class in avn.acoustics) add_ev_song_truth_table() (avn.dataloading.Utils method) add_file_bounds() (avn.syntax.SyntaxData method), [1] add_gaps() (avn.syntax.SyntaxData method), [1] avn.acoustics module avn.dataloading module

avn.plotting module, [1] avn.segmentation module, [1] avn.syntax module, [1] avn.timing module

B

bandpass_filter() (avn.dataloading.SongFile method), [1]

Bird_ID (avn.segmentation.SegData attribute), [1]

C

calc_all_feature_stats() (avn.acoustics.AcousticData method) calc_all_features() (avn.acoustics.AcousticData method) (avn.acoustics.SongInterval method) calc_amplitude() (avn.acoustics.SongInterval method) calc_amplitude_modulation() (avn.acoustics.SongInterval method) calc_entropy() (avn.acoustics.SongInterval method) calc_entropy_rate_all_birds() (avn.syntax.Utils method), [1] calc_F1() (avn.segmentation.Metrics method), [1] calc_F1_many_birds() (avn.segmentation.Utils method), [1]

calc_feature_stats() (avn.acoustics.SongInterval method) calc_frequency_modulation() (avn.acoustics.SongInterval method) calc_gap_duration_entropy() (avn.timing.SegmentTiming method) calc_goodness() (avn.acoustics.SongInterval method) calc_mean_frequency() (avn.acoustics.SongInterval method) calc_peak_frequency_cv() (avn.timing.RhythmAnalysis method) calc_pitch() (avn.acoustics.SongInterval method) calc_rhythm_spectrogram_entropy() (avn.timing.RhythmAnalysis method) calc_syll_duration_entropy() (avn.timing.SegmentTiming method) clean_seg_table() (avn.dataloading.Utils method)

D

data (avn.dataloading.SongFile attribute)

drop_calls() (avn.syntax.SyntaxData method), [1] duration (avn.dataloading.SongFile attribute)

F

file_path (avn.dataloading.SongFile attribute)

G

get_entropy_rate() (avn.syntax.SyntaxData method), [1] get_gap_durations() (avn.timing.SegmentTiming method) get_gaps_df() (avn.syntax.SyntaxData method), [1] get_intro_notes_df() (avn.syntax.SyntaxData method), [1] get_pair_repetition_stats() (avn.syntax.SyntaxData method), [1] get_prob_repetitions() (avn.syntax.SyntaxData method), [1] get_prop_sylls_in_short_bouts() (avn.syntax.SyntaxData method), [1] get_refined_peak_frequencies() (avn.timing.RhythmAnalysis method) get_seg_criteria() (avn.segmentation.MFCC method), [1] (avn.segmentation.MFCCDerivative method), [1] (avn.segmentation.RMSE method), [1] (avn.segmentation.RMSEDerivative method), [1] (avn.segmentation.Segmenter method), [1], [2], [3]

get_single_repetition_stats() (avn.syntax.SyntaxData method), [1] get_syll_durations() (avn.timing.SegmentTiming method) get_syll_onsets_offsets() (avn.segmentation.Segmenter method), [1] get_syll_stats_all_birds() (avn.syntax.Utils method), [1] get_time_delta_df() (avn.segmentation.Metrics method), [1] get_time_deltas_many_birds() (avn.segmentation.Utils method), [1]

I

identify_abnormal_syllables() (avn.syntax.Utils method), [1]

M

make_rhythm_spectrogram() (avn.timing.RhythmAnalysis method) make_segmentation_table() (avn.segmentation.Segmenter method), [1], [2], [3] make_segmentation_table_many_birds() (avn.segmentation.Utils method), [1] make_spectrogram() (in module avn.plotting), [1] make_syntax_raster() (avn.syntax.SyntaxData method), [1] make_transition_matrix() (avn.syntax.SyntaxData method), [1] merge_per_syll_stats() (avn.syntax.Utils method), [1] Metrics (class in avn.segmentation), [1]

MFCC (class in avn.segmentation), [1] MFCCDerivative (class in avn.segmentation), [1] module avn.acoustics avn.dataloading avn.plotting, [1] avn.segmentation, [1] avn.syntax, [1] avn.timing

N

None (avn.segmentation.Segmenter attribute), [1]

P

Plot (class in avn.segmentation), [1] plot_feature() (avn.acoustics.SongInterval method) plot_peak_frequencies() (avn.timing.RhythmAnalysis method) plot_rhythm_spectrogram() (avn.timing.RhythmAnalysis method) plot_seg_criteria() (avn.segmentation.Plot method), [1] plot_segmentations() (avn.segmentation.Plot method), [1] plot_segmentations_many_birds() (avn.segmentation.Utils method), [1]

plot_spectrogram() (in module avn.plotting), [1] plot_spectrogram_with_labels() (in module avn.plotting), [1] plot_syll() (in module avn.plotting), [1] plot_syll_examples() (avn.plotting.Utils method), [1] plot_syntax_raster() (avn.syntax.SyntaxData method), [1] (in module avn.plotting), [1] plot_syntax_raster_all_birds() (avn.syntax.Utils method), [1] plot_transition_matrix_all_birds() (avn.syntax.Utils method), [1]

R

rescale() (avn.segmentation.Segmenter method), [1], [2], [3] rhythm_spectrum_single_file() (avn.timing.RhythmAnalysis method)

RhythmAnalysis (class in avn.timing) RMSE (class in avn.segmentation), [1] RMSEDerivative (class in avn.segmentation), [1]

S

sample_rate (avn.dataloading.SongFile attribute) save_as_csv() (avn.segmentation.SegData method), [1], [2], [3] save_feature_stats() (avn.acoustics.AcousticData method) (avn.acoustics.SongInterval method) save_features() (avn.acoustics.AcousticData method) (avn.acoustics.SongInterval method) save_syntax_data() (avn.syntax.SyntaxData method), [1] seg_metrics (avn.segmentation.SegData attribute), [1]

seg_table (avn.segmentation.SegData attribute), [1] SegData (class in avn.segmentation), [1] Segmenter (class in avn.segmentation), [1] SegmentTiming (class in avn.timing) select_syll() (avn.dataloading.Utils method) SongFile (class in avn.dataloading) SongInterval (class in avn.acoustics) SyntaxData (class in avn.syntax), [1]

T

threshold_optimization() (avn.segmentation.Utils method), [1]

threshold_optimization_many_birds() (avn.segmentation.Utils method), [1] true_seg_table (avn.segmentation.SegData attribute), [1]

U

Utils (class in avn.dataloading) (class in avn.plotting), [1] (class in avn.segmentation), [1] (class in avn.syntax), [1]